[Bug 709] New: Crash in native code, problematic frame: libfreetype.so.6
bugzilla-daemon at icedtea.classpath.org
bugzilla-daemon at icedtea.classpath.org
Sun May 8 06:14:12 PDT 2011
http://icedtea.classpath.org/bugzilla/show_bug.cgi?id=709
Summary: Crash in native code, problematic frame:
libfreetype.so.6
Product: IcedTea
Version: unspecified
Platform: all
OS/Version: Linux
Status: NEW
Severity: critical
Priority: P5
Component: IcedTea6
AssignedTo: unassigned at icedtea.classpath.org
ReportedBy: reinout at gmail.com
Accoring to ABRT this bug is also filed downstream as
https://bugzilla.redhat.com/show_bug.cgi?id=700979
[reinout at elmont taverna-workbench-2.2.0]$ ./taverna.sh
WARN 2011-05-08 14:30:53,833
(net.sf.taverna.raven.repository.impl.ArtifactImpl:85) - Unable to find a
version for the dependency log4j:log4j - skipping
WARN 2011-05-08 14:30:53,861
(net.sf.taverna.raven.repository.impl.ArtifactImpl:85) - Unable to find a
version for the dependency junit:junit - skipping
ERROR 2011-05-08 14:30:57,958 (System.err:139) - Central class is
org.biomoby.client.CentralDigestCachedImpl
ERROR 2011-05-08 14:31:23,849
(net.sf.taverna.t2.workbench.ui.impl.Workbench:117) - Uncaught exception in
Thread[BioMOBY GetOntologyThread,1,Service description providers]
java.lang.InternalError
at sun.misc.URLClassPath$JarLoader.getResource(URLClassPath.java:769)
at sun.misc.URLClassPath.getResource(URLClassPath.java:185)
at java.net.URLClassLoader$1.run(URLClassLoader.java:209)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at java.lang.ClassLoader.loadClass(ClassLoader.java:314)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
at java.lang.ClassLoader.loadClass(ClassLoader.java:314)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
at
java.util.ResourceBundle$RBClassLoader.loadClass(ResourceBundle.java:463)
at java.util.ResourceBundle$Control.newBundle(ResourceBundle.java:2401)
at java.util.ResourceBundle.loadBundle(ResourceBundle.java:1424)
at java.util.ResourceBundle.findBundle(ResourceBundle.java:1383)
at java.util.ResourceBundle.findBundle(ResourceBundle.java:1310)
at java.util.ResourceBundle.getBundleImpl(ResourceBundle.java:1252)
at java.util.ResourceBundle.getBundle(ResourceBundle.java:733)
at java.util.logging.Level.getLocalizedName(Level.java:240)
at java.util.logging.SimpleFormatter.format(SimpleFormatter.java:86)
at java.util.logging.StreamHandler.publish(StreamHandler.java:196)
at java.util.logging.ConsoleHandler.publish(ConsoleHandler.java:105)
at java.util.logging.Logger.log(Logger.java:498)
at java.util.logging.Logger.doLog(Logger.java:520)
at java.util.logging.Logger.log(Logger.java:543)
at org.biomoby.shared.MobyDataType.getDataType(MobyDataType.java:122)
at
net.sf.taverna.t2.activities.biomoby.BiomobyCache.cacheForRegistry(BiomobyCache.java:51)
at
net.sf.taverna.t2.activities.biomoby.BiomobyCache.cacheForRegistryEndpoint(BiomobyCache.java:75)
at
net.sf.taverna.t2.activities.biomoby.GetOntologyThread.run(GetOntologyThread.java:57)
Caused by: java.util.zip.ZipException: error in opening zip file
at java.util.zip.ZipFile.open(Native Method)
at java.util.zip.ZipFile.<init>(ZipFile.java:131)
at java.util.jar.JarFile.<init>(JarFile.java:150)
at java.util.jar.JarFile.<init>(JarFile.java:87)
at sun.misc.URLClassPath$JarLoader.getJarFile(URLClassPath.java:660)
at sun.misc.URLClassPath$JarLoader.access$600(URLClassPath.java:555)
at sun.misc.URLClassPath$JarLoader$1.run(URLClassPath.java:622)
at java.security.AccessController.doPrivileged(Native Method)
at sun.misc.URLClassPath$JarLoader.ensureOpen(URLClassPath.java:614)
at sun.misc.URLClassPath$JarLoader.getResource(URLClassPath.java:767)
... 27 more
ERROR 2011-05-08 14:31:23,849 (System.err:139) - Error while executing main()
of net.sf.taverna.t2.workbench.ui.impl.WorkbenchLauncher
ERROR 2011-05-08 14:31:23,853 (System.err:139) - java.lang.NullPointerException
ERROR 2011-05-08 14:31:23,854 (System.err:139) - at
sun.font.TrueTypeGlyphMapper.<init>(TrueTypeGlyphMapper.java:62)
ERROR 2011-05-08 14:31:23,854 (System.err:139) - at
sun.font.TrueTypeFont.getMapper(TrueTypeFont.java:1219)
ERROR 2011-05-08 14:31:23,854 (System.err:139) - at
sun.font.CompositeGlyphMapper.getSlotMapper(CompositeGlyphMapper.java:114)
ERROR 2011-05-08 14:31:23,855 (System.err:139) - at
sun.font.CompositeGlyphMapper.convertToGlyph(CompositeGlyphMapper.java:124)
ERROR 2011-05-08 14:31:23,855 (System.err:139) - at
sun.font.CompositeGlyphMapper.charToGlyph(CompositeGlyphMapper.java:162)
ERROR 2011-05-08 14:31:23,855 (System.err:139) - at
sun.font.CompositeStrike.getCodePointAdvance(CompositeStrike.java:158)
ERROR 2011-05-08 14:31:23,855 (System.err:139) - at
sun.font.FontDesignMetrics.handleCharWidth(FontDesignMetrics.java:415)
ERROR 2011-05-08 14:31:23,856 (System.err:139) - at
sun.font.FontDesignMetrics.getWidths(FontDesignMetrics.java:537)
ERROR 2011-05-08 14:31:23,856 (System.err:139) - at
javax.swing.text.WrappedPlainView.getDefaultSpan(WrappedPlainView.java:344)
ERROR 2011-05-08 14:31:23,856 (System.err:139) - at
javax.swing.text.WrappedPlainView.access$000(WrappedPlainView.java:55)
ERROR 2011-05-08 14:31:23,856 (System.err:139) - at
javax.swing.text.WrappedPlainView$WrappedLine.getPreferredSpan(WrappedPlainView.java:608)
ERROR 2011-05-08 14:31:23,857 (System.err:139) - at
javax.swing.text.View.getMinimumSpan(View.java:251)
ERROR 2011-05-08 14:31:23,857 (System.err:139) - at
javax.swing.text.BoxView.calculateMinorAxisRequirements(BoxView.java:903)
ERROR 2011-05-08 14:31:23,857 (System.err:139) - at
javax.swing.text.BoxView.checkRequests(BoxView.java:935)
ERROR 2011-05-08 14:31:23,858 (System.err:139) - at
javax.swing.text.BoxView.setSpanOnAxis(BoxView.java:343)
ERROR 2011-05-08 14:31:23,858 (System.err:139) - at
javax.swing.text.BoxView.layout(BoxView.java:708)
ERROR 2011-05-08 14:31:23,860 (System.err:139) - at
javax.swing.text.BoxView.setSize(BoxView.java:397)
ERROR 2011-05-08 14:31:23,861 (System.err:139) - at
javax.swing.text.WrappedPlainView.setSize(WrappedPlainView.java:440)
ERROR 2011-05-08 14:31:23,861 (System.err:139) - at
javax.swing.plaf.basic.BasicTextUI$RootView.setSize(BasicTextUI.java:1719)
ERROR 2011-05-08 14:31:23,860
(net.sf.taverna.t2.workbench.ui.impl.Workbench:117) - Uncaught exception in
Thread[AWT-EventQueue-0,6,main]
java.lang.NullPointerException
at sun.font.TrueTypeGlyphMapper.<init>(TrueTypeGlyphMapper.java:62)
at sun.font.TrueTypeFont.getMapper(TrueTypeFont.java:1219)
at
sun.font.CompositeGlyphMapper.getSlotMapper(CompositeGlyphMapper.java:114)
at
sun.font.CompositeGlyphMapper.convertToGlyph(CompositeGlyphMapper.java:124)
at
sun.font.CompositeGlyphMapper.charToGlyph(CompositeGlyphMapper.java:162)
at
sun.font.CompositeStrike.getCodePointAdvance(CompositeStrike.java:158)
at
sun.font.FontDesignMetrics.handleCharWidth(FontDesignMetrics.java:415)
at sun.font.FontDesignMetrics.getWidths(FontDesignMetrics.java:537)
at
javax.swing.text.WrappedPlainView.getDefaultSpan(WrappedPlainView.java:344)
at
javax.swing.text.WrappedPlainView.access$000(WrappedPlainView.java:55)
at
javax.swing.text.WrappedPlainView$WrappedLine.getPreferredSpan(WrappedPlainView.java:608)
at javax.swing.text.View.getMinimumSpan(View.java:251)
at
javax.swing.text.BoxView.calculateMinorAxisRequirements(BoxView.java:903)
at javax.swing.text.BoxView.checkRequests(BoxView.java:935)
at javax.swing.text.BoxView.setSpanOnAxis(BoxView.java:343)
at javax.swing.text.BoxView.layout(BoxView.java:708)
at javax.swing.text.BoxView.setSize(BoxView.java:397)
at javax.swing.text.WrappedPlainView.setSize(WrappedPlainView.java:440)
at
javax.swing.plaf.basic.BasicTextUI$RootView.setSize(BasicTextUI.java:1719)
at
javax.swing.plaf.basic.BasicTextUI.getPreferredSize(BasicTextUI.java:922)
at
javax.swing.plaf.basic.BasicTextAreaUI.getPreferredSize(BasicTextAreaUI.java:120)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1634)
at javax.swing.JTextArea.getPreferredSize(JTextArea.java:634)
at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109)
at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910)
at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at
javax.swing.ViewportLayout.preferredLayoutSize(ViewportLayout.java:95)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at
javax.swing.ScrollPaneLayout.preferredLayoutSize(ScrollPaneLayout.java:492)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.calculateSize(BasicTabbedPaneUI.java:2304)
at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.preferredLayoutSize(BasicTabbedPaneUI.java:2278)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.GridLayout.preferredLayoutSize(GridLayout.java:341)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.calculateSize(BasicTabbedPaneUI.java:2304)
at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.preferredLayoutSize(BasicTabbedPaneUI.java:2278)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at
javax.swing.plaf.basic.BasicSplitPaneUI$BasicHorizontalLayoutManager.preferredLayoutSize(BasicSplitPaneUI.java:1486)
at
javax.swing.plaf.basic.BasicSplitPaneUI.getPreferredSize(BasicSplitPaneUI.java:1082)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1634)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at
javax.swing.plaf.basic.BasicSplitPaneUI$BasicHorizontalLayoutManager.preferredLayoutSize(BasicSplitPaneUI.java:1486)
at
javax.swing.plaf.basic.BasicSplitPaneUI.getPreferredSize(BasicSplitPaneUI.java:1082)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1634)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
at java.awt.Container.preferredSize(Container.java:1605)
at java.awt.Container.getPreferredSize(Container.java:1590)
at javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109)
at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910)
at java.awt.GridBagLayout.ArrangeGrid(GridBagLayout.java:2065)
at java.awt.GridBagLayout.arrangeGrid(GridBagLayout.java:2025)
at java.awt.GridBagLayout.layoutContainer(GridBagLayout.java:806)
at java.awt.Container.layout(Container.java:1427)
at java.awt.Container.doLayout(Container.java:1416)
at java.awt.Container.validateTree(Container.java:1513)
at java.awt.Container.validateTree(Container.java:1519)
at java.awt.Container.validateTree(Container.java:1519)
at java.awt.Container.validateTree(Container.java:1519)
at java.awt.Container.validate(Container.java:1486)
at java.awt.Window.dispatchEventImpl(Window.java:2515)
at java.awt.Component.dispatchEvent(Component.java:4455)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
at java.awt.EventQueue.access$000(EventQueue.java:96)
at java.awt.EventQueue$1.run(EventQueue.java:608)
at java.awt.EventQueue$1.run(EventQueue.java:606)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
at java.awt.EventQueue$2.run(EventQueue.java:622)
at java.awt.EventQueue$2.run(EventQueue.java:620)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
WARN 2011-05-08 14:31:23,863
(net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives:568) - Could not
save perspectives
java.io.FileNotFoundException:
/home/reinout/.taverna-2.2.0/conf/user_perpectives.xml (Too many open files)
at java.io.FileOutputStream.open(Native Method)
at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
at java.io.FileOutputStream.<init>(FileOutputStream.java:160)
at
net.sf.taverna.t2.ui.perspectives.CustomPerspectiveFactory.saveAll(CustomPerspectiveFactory.java:104)
at
net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives.saveAll(WorkbenchPerspectives.java:213)
at
net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives$RefreshRunner.run(WorkbenchPerspectives.java:566)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:226)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:647)
at java.awt.EventQueue.access$000(EventQueue.java:96)
at java.awt.EventQueue$1.run(EventQueue.java:608)
at java.awt.EventQueue$1.run(EventQueue.java:606)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:617)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
ERROR 2011-05-08 14:31:23,861 (System.err:139) - at
javax.swing.plaf.basic.BasicTextUI.getPreferredSize(BasicTextUI.java:922)
ERROR 2011-05-08 14:31:24,027 (System.err:139) - at
javax.swing.plaf.basic.BasicTextAreaUI.getPreferredSize(BasicTextAreaUI.java:120)
ERROR 2011-05-08 14:31:24,028 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1634)
ERROR 2011-05-08 14:31:24,028 (System.err:139) - at
javax.swing.JTextArea.getPreferredSize(JTextArea.java:634)
ERROR 2011-05-08 14:31:24,028 (System.err:139) - at
java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109)
ERROR 2011-05-08 14:31:24,028 (System.err:139) - at
java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910)
ERROR 2011-05-08 14:31:24,029 (System.err:139) - at
java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730)
ERROR 2011-05-08 14:31:24,029 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,029 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,029 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,029 (System.err:139) - at
javax.swing.ViewportLayout.preferredLayoutSize(ViewportLayout.java:95)
ERROR 2011-05-08 14:31:24,030 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,030 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,030 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,030 (System.err:139) - at
javax.swing.ScrollPaneLayout.preferredLayoutSize(ScrollPaneLayout.java:492)
ERROR 2011-05-08 14:31:24,030 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,031 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,031 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,031 (System.err:139) - at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.calculateSize(BasicTabbedPaneUI.java:2304)
ERROR 2011-05-08 14:31:24,040 (System.err:139) - at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.preferredLayoutSize(BasicTabbedPaneUI.java:2278)
ERROR 2011-05-08 14:31:24,041 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,041 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,041 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,042 (System.err:139) - at
java.awt.GridLayout.preferredLayoutSize(GridLayout.java:341)
ERROR 2011-05-08 14:31:24,042 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,042 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,043 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,043 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,043 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,043 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,044 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,044 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,044 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,045 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,045 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,045 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,045 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,046 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,046 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,046 (System.err:139) - at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.calculateSize(BasicTabbedPaneUI.java:2304)
ERROR 2011-05-08 14:31:24,047 (System.err:139) - at
javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.preferredLayoutSize(BasicTabbedPaneUI.java:2278)
ERROR 2011-05-08 14:31:24,047 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,047 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,047 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,048 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,048 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,048 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,048 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,049 (System.err:139) - at
javax.swing.plaf.basic.BasicSplitPaneUI$BasicHorizontalLayoutManager.preferredLayoutSize(BasicSplitPaneUI.java:1486)
ERROR 2011-05-08 14:31:24,049 (System.err:139) - at
javax.swing.plaf.basic.BasicSplitPaneUI.getPreferredSize(BasicSplitPaneUI.java:1082)
ERROR 2011-05-08 14:31:24,049 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1634)
ERROR 2011-05-08 14:31:24,050 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,050 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,050 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,051 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,051 (System.err:139) - at
javax.swing.plaf.basic.BasicSplitPaneUI$BasicHorizontalLayoutManager.preferredLayoutSize(BasicSplitPaneUI.java:1486)
ERROR 2011-05-08 14:31:24,051 (System.err:139) - at
javax.swing.plaf.basic.BasicSplitPaneUI.getPreferredSize(BasicSplitPaneUI.java:1082)
ERROR 2011-05-08 14:31:24,052 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1634)
ERROR 2011-05-08 14:31:24,052 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,052 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,052 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,053 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,053 (System.err:139) - at
java.awt.BorderLayout.preferredLayoutSize(BorderLayout.java:719)
ERROR 2011-05-08 14:31:24,053 (System.err:139) - at
java.awt.Container.preferredSize(Container.java:1605)
ERROR 2011-05-08 14:31:24,053 (System.err:139) - at
java.awt.Container.getPreferredSize(Container.java:1590)
ERROR 2011-05-08 14:31:24,054 (System.err:139) - at
javax.swing.JComponent.getPreferredSize(JComponent.java:1636)
ERROR 2011-05-08 14:31:24,054 (System.err:139) - at
java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109)
ERROR 2011-05-08 14:31:24,054 (System.err:139) - at
java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910)
ERROR 2011-05-08 14:31:24,055 (System.err:139) - at
java.awt.GridBagLayout.ArrangeGrid(GridBagLayout.java:2065)
ERROR 2011-05-08 14:31:24,055 (System.err:139) - at
java.awt.GridBagLayout.arrangeGrid(GridBagLayout.java:2025)
ERROR 2011-05-08 14:31:24,055 (System.err:139) - at
java.awt.GridBagLayout.layoutContainer(GridBagLayout.java:806)
ERROR 2011-05-08 14:31:24,055 (System.err:139) - at
java.awt.Container.layout(Container.java:1427)
ERROR 2011-05-08 14:31:24,056 (System.err:139) - at
java.awt.Container.doLayout(Container.java:1416)
ERROR 2011-05-08 14:31:24,056 (System.err:139) - at
java.awt.Container.validateTree(Container.java:1513)
ERROR 2011-05-08 14:31:24,056 (System.err:139) - at
java.awt.Container.validateTree(Container.java:1519)
ERROR 2011-05-08 14:31:24,056 (System.err:139) - at
java.awt.Container.validateTree(Container.java:1519)
ERROR 2011-05-08 14:31:24,057 (System.err:139) - at
java.awt.Container.validateTree(Container.java:1519)
ERROR 2011-05-08 14:31:24,057 (System.err:139) - at
java.awt.Container.validate(Container.java:1486)
ERROR 2011-05-08 14:31:24,057 (System.err:139) - at
java.awt.Window.show(Window.java:900)
ERROR 2011-05-08 14:31:24,058 (System.err:139) - at
java.awt.Component.show(Component.java:1551)
ERROR 2011-05-08 14:31:24,058 (System.err:139) - at
java.awt.Component.setVisible(Component.java:1503)
ERROR 2011-05-08 14:31:24,058 (System.err:139) - at
java.awt.Window.setVisible(Window.java:881)
ERROR 2011-05-08 14:31:24,058 (System.err:139) - at
net.sf.taverna.t2.workbench.ui.impl.WorkbenchLauncher.launch(WorkbenchLauncher.java:29)
ERROR 2011-05-08 14:31:24,059 (System.err:139) - at
net.sf.taverna.raven.launcher.Launcher.launchMain(Launcher.java:150)
ERROR 2011-05-08 14:31:24,059 (System.err:139) - at
net.sf.taverna.raven.launcher.Launcher.main(Launcher.java:66)
ERROR 2011-05-08 14:31:24,059 (System.err:139) - at
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
ERROR 2011-05-08 14:31:24,060 (System.err:139) - at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
ERROR 2011-05-08 14:31:24,060 (System.err:139) - at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
ERROR 2011-05-08 14:31:24,060 (System.err:139) - at
java.lang.reflect.Method.invoke(Method.java:616)
ERROR 2011-05-08 14:31:24,060 (System.err:139) - at
net.sf.taverna.raven.prelauncher.PreLauncher.runLauncher(PreLauncher.java:115)
ERROR 2011-05-08 14:31:24,061 (System.err:139) - at
net.sf.taverna.raven.prelauncher.PreLauncher.launchArgs(PreLauncher.java:69)
ERROR 2011-05-08 14:31:24,061 (System.err:139) - at
net.sf.taverna.raven.prelauncher.PreLauncher.main(PreLauncher.java:47)
ERROR 2011-05-08 14:31:24,127
(net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives:182) - Error reading
user perspectives
java.io.FileNotFoundException:
/home/reinout/.taverna-2.2.0/conf/user_perpectives.xml (Too many open files)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.<init>(FileInputStream.java:137)
at java.io.FileInputStream.<init>(FileInputStream.java:96)
at
sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:87)
at
sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:178)
at org.apache.xerces.impl.XMLEntityManager.setupCurrentEntity(Unknown
Source)
at
org.apache.xerces.impl.XMLVersionDetector.determineDocVersion(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown
Source)
at org.jdom.input.SAXBuilder.build(SAXBuilder.java:453)
at org.jdom.input.SAXBuilder.build(SAXBuilder.java:810)
at org.jdom.input.SAXBuilder.build(SAXBuilder.java:789)
at
net.sf.taverna.t2.ui.perspectives.CustomPerspectiveFactory.getAll(CustomPerspectiveFactory.java:65)
at
net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives.initialisePerspectives(WorkbenchPerspectives.java:179)
at
net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives.access$1100(WorkbenchPerspectives.java:83)
at
net.sf.taverna.t2.workbench.ui.impl.WorkbenchPerspectives$RefreshRunner.run(WorkbenchPerspectives.java:572)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:226)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:647)
at java.awt.EventQueue.access$000(EventQueue.java:96)
at java.awt.EventQueue$1.run(EventQueue.java:608)
at java.awt.EventQueue$1.run(EventQueue.java:606)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:617)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x0000003b4901ee00, pid=7130, tid=140340163417856
#
# JRE version: 6.0_22-b22
# Java VM: OpenJDK 64-Bit Server VM (20.0-b11 mixed mode linux-amd64 compressed
oops)
# Derivative: IcedTea6 1.10.1
# Distribution: Fedora release 15 (Lovelock), package
fedora-57.1.10.1.fc15-x86_64
# Problematic frame:
# C [libfreetype.so.6+0x1ee00]
#
# Can not save log file, dump to screen..
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x0000003b4901ee00, pid=7130, tid=140340163417856
#
# JRE version: 6.0_22-b22
# Java VM: OpenJDK 64-Bit Server VM (20.0-b11 mixed mode linux-amd64 compressed
oops)
# Derivative: IcedTea6 1.10.1
# Distribution: Fedora release 15 (Lovelock), package
fedora-57.1.10.1.fc15-x86_64
# Problematic frame:
# C [libfreetype.so.6+0x1ee00]
#
# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
# http://icedtea.classpath.org/bugzilla
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x00007fa330478800): JavaThread "AWT-EventQueue-0"
[_thread_in_native, id=7312, stack(0x00007fa37d869000,0x00007fa37d96a000)]
siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR),
si_addr=0x0000000000000000
Registers:
RAX=0x0000000000000014, RBX=0x00007fa37d966820, RCX=0x000000000000000a,
RDX=0x0000000000000000
RSP=0x00007fa37d966648, RBP=0x00007fa3300872c0, RSI=0x00007fa3300a29b0,
RDI=0x00007fa37d966820
R8 =0x0000000040000000, R9 =0x0000000000000000, R10=0x00007fa38d93a5a0,
R11=0x0000003b42961e10
R12=0x0000000000000000, R13=0x0000000000000000, R14=0x0000000000000038,
R15=0x0000000000000000
RIP=0x0000003b4901ee00, EFLAGS=0x0000000000010212, CSGSFS=0x0000000000000033,
ERR=0x0000000000000004
TRAPNO=0x000000000000000e
Top of Stack: (sp=0x00007fa37d966648)
0x00007fa37d966648: 0000003b49024899 00007fa385000438
0x00007fa37d966658: 00007fa330136b90 0000000041880000
0x00007fa37d966668: 0000000000005000 0000000000005000
0x00007fa37d966678: 0000003b49022849 00007fa330124b20
0x00007fa37d966688: 0000003b490285d4 00007fa300000000
0x00007fa37d966698: 732e6975c1148000 0000007300000000
0x00007fa37d9666a8: 00000000fd5745b8 00007fa330124ba8
0x00007fa37d9666b8: 00007fa330124d3a 00007fa330124be8
0x00007fa37d9666c8: 00007fa330124d36 00007fa330478800
0x00007fa37d9666d8: 00007fa3305396b8 00007fa37d966750
0x00007fa37d9666e8: 00007fa37d9669f8 0000000000000000
0x00007fa37d9666f8: 00007fa330478800 00007fa37d9669f0
0x00007fa37d966708: 00007fa3300a2dc0 0000000000000055
0x00007fa37d966718: 00007fa330124920 0000000000030004
0x00007fa37d966728: 00007fa3300a2dc0 000000000000c9bc
0x00007fa37d966738: 0000003b49012974 00007fa330136c50
0x00007fa37d966748: 00007fa3300872c0 00007fa37d966820
0x00007fa37d966758: 0000003b49028cf7 00007fa330124b20
0x00007fa37d966768: 00007fa330136b90 00007fa37d966820
0x00007fa37d966778: 0000000000000000 00007fa300030004
0x00007fa37d966788: 000001a37d9669f0 00007fa330478800
0x00007fa37d966798: 080005db000000b2 00007fa330539650
0x00007fa37d9667a8: 00007fa330124920 0000000000030004
0x00007fa37d9667b8: 0000000000000000 00007fa330136c50
0x00007fa37d9667c8: 0000000000000000 0000000000000038
0x00007fa37d9667d8: 0000003b49029751 00007fa37d966970
0x00007fa37d9667e8: 00007fa38d24eba0 00007fa37d966810
0x00007fa37d9667f8: 00007fa38d22c455 00007fa3305396b8
0x00007fa37d966808: 00007fa33042beb0 00007fa37d966950
0x00007fa37d966818: 00007fa38d2380e0 00007fa3300872c0
0x00007fa37d966828: 00007fa330136c50 00007fa330124920
0x00007fa37d966838: 00007fa330136b90 0000000000030004
Instructions: (pc=0x0000003b4901ee00)
0x0000003b4901ede0: 48 8b 97 60 01 00 00 b8 14 00 00 00 48 8d 4a 0a
0x0000003b4901edf0: 48 39 8f 68 01 00 00 73 07 f3 c3 0f 1f 44 00 00
0x0000003b4901ee00: 0f be 32 0f b6 42 01 c1 e6 08 09 f0 66 89 47 3c
0x0000003b4901ee10: 0f be 72 02 0f b6 42 03 c1 e6 08 09 f0 48 0f bf
Register to memory mapping:
RAX=0x0000000000000014 is an unknown value
RBX=0x00007fa37d966820 is pointing into the stack for thread:
0x00007fa330478800
RCX=0x000000000000000a is an unknown value
RDX=0x0000000000000000 is an unknown value
RSP=0x00007fa37d966648 is pointing into the stack for thread:
0x00007fa330478800
RBP=0x00007fa3300872c0 is an unknown value
RSI=0x00007fa3300a29b0 is an unknown value
RDI=0x00007fa37d966820 is pointing into the stack for thread:
0x00007fa330478800
R8 =0x0000000040000000 is an unknown value
R9 =0x0000000000000000 is an unknown value
R10=0x00007fa38d93a5a0: <offset 0xbbc5a0> in
/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64/server/libjvm.so
at 0x00007fa38cd7e000
R11=0x0000003b42961e10: <offset 0x161e10> in /lib64/libc.so.6 at
0x0000003b42800000
R12=0x0000000000000000 is an unknown value
R13=0x0000000000000000 is an unknown value
R14=0x0000000000000038 is an unknown value
R15=0x0000000000000000 is an unknown value
Stack: [0x00007fa37d869000,0x00007fa37d96a000], sp=0x00007fa37d966648, free
space=1013k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [libfreetype.so.6+0x1ee00]
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j sun.font.FreetypeFontScaler.getGlyphImageNative(Lsun/font/Font2D;JJI)J+0
j sun.font.FreetypeFontScaler.getGlyphImage(JI)J+26
j sun.font.FileFont.getGlyphImage(JI)J+6
j sun.font.FileFontStrike.getGlyphImagePtr(I)J+49
j sun.font.FileFontStrike.getGlyphAdvance(I)F+109
j sun.font.CompositeStrike.getGlyphAdvance(I)F+11
j sun.font.CompositeStrike.getCodePointAdvance(I)F+12
j sun.font.FontDesignMetrics.handleCharWidth(I)F+5
j sun.font.FontDesignMetrics.getLatinCharWidth(C)F+16
j sun.font.FontDesignMetrics.charsWidth([CII)I+121
j
javax.swing.text.Utilities.getTabbedTextWidth(Ljavax/swing/text/View;Ljavax/swing/text/Segment;Ljava/awt/FontMetrics;ILjavax/swing/text/TabExpander;I[I)I+337
j
javax.swing.text.GlyphPainter1.getSpan(Ljavax/swing/text/GlyphView;IILjavax/swing/text/TabExpander;F)F+35
j javax.swing.text.GlyphView.getPreferredSpan(I)F+77
j javax.swing.text.FlowView$LogicalView.getPreferredSpan(I)F+32
j
javax.swing.text.FlowView.calculateMinorAxisRequirements(ILjavax/swing/SizeRequirements;)Ljavax/swing/SizeRequirements;+17
j
javax.swing.text.html.ParagraphView.calculateMinorAxisRequirements(ILjavax/swing/SizeRequirements;)Ljavax/swing/SizeRequirements;+3
j javax.swing.text.BoxView.checkRequests(I)V+86
j javax.swing.text.BoxView.getMinimumSpan(I)F+2
j javax.swing.text.html.ParagraphView.getMinimumSpan(I)F+11
j
javax.swing.text.BoxView.calculateMinorAxisRequirements(ILjavax/swing/SizeRequirements;)Ljavax/swing/SizeRequirements;+36
j
javax.swing.text.html.BlockView.calculateMinorAxisRequirements(ILjavax/swing/SizeRequirements;)Ljavax/swing/SizeRequirements;+31
j javax.swing.text.BoxView.checkRequests(I)V+86
j javax.swing.text.BoxView.getMinimumSpan(I)F+2
j javax.swing.text.html.BlockView.getMinimumSpan(I)F+2
j
javax.swing.text.BoxView.calculateMinorAxisRequirements(ILjavax/swing/SizeRequirements;)Ljavax/swing/SizeRequirements;+36
j
javax.swing.text.html.BlockView.calculateMinorAxisRequirements(ILjavax/swing/SizeRequirements;)Ljavax/swing/SizeRequirements;+31
j javax.swing.text.BoxView.checkRequests(I)V+86
j javax.swing.text.BoxView.getPreferredSpan(I)F+2
j javax.swing.text.html.BlockView.getPreferredSpan(I)F+2
j
javax.swing.plaf.basic.BasicHTML$Renderer.<init>(Ljavax/swing/JComponent;Ljavax/swing/text/ViewFactory;Ljavax/swing/text/View;)V+34
j
javax.swing.plaf.basic.BasicHTML.createHTMLView(Ljavax/swing/JComponent;Ljava/lang/String;)Ljavax/swing/text/View;+98
j
javax.swing.plaf.basic.BasicHTML.updateRenderer(Ljavax/swing/JComponent;Ljava/lang/String;)V+40
j
javax.swing.plaf.basic.BasicLabelUI.propertyChange(Ljava/beans/PropertyChangeEvent;)V+40
j
javax.swing.plaf.synth.SynthLabelUI.propertyChange(Ljava/beans/PropertyChangeEvent;)V+2
J
java.beans.PropertyChangeSupport.fire([Ljava/beans/PropertyChangeListener;Ljava/beans/PropertyChangeEvent;)V
j
java.beans.PropertyChangeSupport.firePropertyChange(Ljava/beans/PropertyChangeEvent;)V+73
j
java.beans.PropertyChangeSupport.firePropertyChange(Ljava/lang/String;Ljava/lang/Object;Ljava/lang/Object;)V+32
j
java.awt.Component.firePropertyChange(Ljava/lang/String;Ljava/lang/Object;Ljava/lang/Object;)V+55
j javax.swing.JLabel.setText(Ljava/lang/String;)V+32
j net.sf.taverna.t2.workbench.ui.servicepanel.ServicePanel$1.run()V+19
j java.awt.event.InvocationEvent.dispatch()V+47
j
java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+21
j
java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3
j java.awt.EventQueue$1.run()Ljava/lang/Void;+12
j java.awt.EventQueue$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
J
java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;
j
java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+46
j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+192
j
java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30
j
java.awt.EventDispatchThread.pumpEventsForHierarchy(ILjava/awt/Conditional;Ljava/awt/Component;)V+11
j java.awt.EventDispatchThread.pumpEvents(ILjava/awt/Conditional;)V+4
j java.awt.EventDispatchThread.pumpEvents(Ljava/awt/Conditional;)V+3
j java.awt.EventDispatchThread.run()V+9
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x00007fa388613000 JavaThread "Thread-4" [_thread_blocked, id=7315,
stack(0x00007fa37c859000,0x00007fa37c95a000)]
0x00007fa3281c7800 JavaThread "Image Fetcher 0" daemon [_thread_blocked,
id=7313, stack(0x00007fa37eb6c000,0x00007fa37ec6d000)]
=>0x00007fa330478800 JavaThread "AWT-EventQueue-0" [_thread_in_native, id=7312,
stack(0x00007fa37d869000,0x00007fa37d96a000)]
0x00007fa3305ea000 JavaThread "pool-1-thread-1" [_thread_blocked, id=7302,
stack(0x00007fa37d061000,0x00007fa37d162000)]
0x00007fa330556000 JavaThread "Thread-9" [_thread_blocked, id=7301,
stack(0x00007fa37d162000,0x00007fa37d263000)]
0x00007fa330584000 JavaThread "SVG Graph controller timer" daemon
[_thread_blocked, id=7293, stack(0x00007fa37d263000,0x00007fa37d364000)]
0x00007fa330549800 JavaThread "GraphAutoScrollTimer" daemon [_thread_blocked,
id=7291, stack(0x00007fa37cb5c000,0x00007fa37cc5d000)]
0x00007fa328010000 JavaThread "derby.rawStoreDaemon" daemon [_thread_blocked,
id=7290, stack(0x00007fa37c24f000,0x00007fa37c350000)]
0x00007fa328273000 JavaThread "Timer-2" daemon [_thread_blocked, id=7287,
stack(0x00007fa37cd5e000,0x00007fa37ce5f000)]
0x00007fa304010000 JavaThread "Keep-Alive-Timer" daemon [_thread_blocked,
id=7285, stack(0x00007fa37d465000,0x00007fa37d566000)]
0x00007fa3282b9800 JavaThread "Timer-1" daemon [_thread_blocked, id=7284,
stack(0x00007fa37ce5f000,0x00007fa37cf60000)]
0x00007fa32825f000 JavaThread "derby.antiGC" daemon [_thread_blocked,
id=7283, stack(0x00007fa37c758000,0x00007fa37c859000)]
0x00007fa318052000 JavaThread "Find service descriptions from Biomoby service
http://moby.ucalgary.ca/moby/MOBY-Central.pl" daemon [_thread_in_native,
id=7274, stack(0x00007fa37ca5b000,0x00007fa37cb5c000)]
0x00007fa31801f000 JavaThread "Find service descriptions from Biomart service
http://www.biomart.org/biomart/martservice" daemon [_thread_in_native, id=7269,
stack(0x00007fa37cf60000,0x00007fa37d061000)]
0x00007fa3304f3000 JavaThread "TimerQueue" daemon [_thread_blocked, id=7265,
stack(0x00007fa37d364000,0x00007fa37d465000)]
0x00007fa33041f800 JavaThread "Clear status line" daemon [_thread_blocked,
id=7263, stack(0x00007fa37d566000,0x00007fa37d667000)]
0x00007fa3304c2800 JavaThread "Search field timer" daemon [_thread_blocked,
id=7262, stack(0x00007fa37d667000,0x00007fa37d768000)]
0x00007fa330446000 JavaThread "Check for updates thread" daemon
[_thread_blocked, id=7261, stack(0x00007fa37d768000,0x00007fa37d869000)]
0x00007fa3882f1800 JavaThread "AWT-Shutdown" [_thread_blocked, id=7159,
stack(0x00007fa37ec6d000,0x00007fa37ed6e000)]
0x00007fa3882bc000 JavaThread "AWT-XAWT" daemon [_thread_in_native, id=7152,
stack(0x00007fa37ee70000,0x00007fa37ef71000)]
0x00007fa38821e800 JavaThread "Java2D Disposer" daemon [_thread_blocked,
id=7151, stack(0x00007fa37f487000,0x00007fa37f588000)]
0x00007fa3880b8000 JavaThread "Low Memory Detector" daemon [_thread_blocked,
id=7149, stack(0x00007fa37feff000,0x00007fa380000000)]
0x00007fa3880b6000 JavaThread "C2 CompilerThread1" daemon [_thread_in_native,
id=7148, stack(0x00007fa384062000,0x00007fa384163000)]
0x00007fa3880b3000 JavaThread "C2 CompilerThread0" daemon [_thread_blocked,
id=7147, stack(0x00007fa384163000,0x00007fa384264000)]
0x00007fa3880ad000 JavaThread "Signal Dispatcher" daemon [_thread_blocked,
id=7146, stack(0x00007fa384264000,0x00007fa384365000)]
0x00007fa388079800 JavaThread "Finalizer" daemon [_thread_blocked, id=7143,
stack(0x00007fa384365000,0x00007fa384466000)]
0x00007fa388077800 JavaThread "Reference Handler" daemon [_thread_blocked,
id=7142, stack(0x00007fa384466000,0x00007fa384567000)]
0x00007fa388007800 JavaThread "main" [_thread_blocked, id=7134,
stack(0x00007fa38cc7d000,0x00007fa38cd7e000)]
Other Threads:
0x00007fa388070800 VMThread [stack: 0x00007fa384567000,0x00007fa384668000]
[id=7141]
0x00007fa3880bd000 WatcherThread [stack:
0x00007fa37fdfe000,0x00007fa37feff000] [id=7150]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap
PSYoungGen total 120448K, used 102977K [0x00000000f7ab0000,
0x0000000100000000, 0x0000000100000000)
eden space 106048K, 87% used
[0x00000000f7ab0000,0x00000000fd5830f0,0x00000000fe240000)
from space 14400K, 69% used
[0x00000000ff140000,0x00000000ffafd528,0x00000000fff50000)
to space 15232K, 0% used
[0x00000000fe240000,0x00000000fe240000,0x00000000ff120000)
PSOldGen total 91840K, used 79151K [0x00000000e7000000,
0x00000000ec9b0000, 0x00000000f7ab0000)
object space 91840K, 86% used
[0x00000000e7000000,0x00000000ebd4bf60,0x00000000ec9b0000)
PSPermGen total 103424K, used 71956K [0x00000000de400000,
0x00000000e4900000, 0x00000000e7000000)
object space 103424K, 69% used
[0x00000000de400000,0x00000000e2a45318,0x00000000e4900000)
Code Cache [0x00007fa385000000, 0x00007fa385480000, 0x00007fa388000000)
total_blobs=1902 nmethods=1106 adapters=749 free_code_cache=45739200
largest_free_block=31744
Dynamic libraries:
Can not get library information for pid = 7312
VM Arguments:
jvm_args: -Xmx400m -XX:MaxPermSize=140m
-Draven.profile=file:///home/reinout/devel/taverna-workbench-2.2.0/conf/current-profile.xml
-Dtaverna.startup=/home/reinout/devel/taverna-workbench-2.2.0
-Djava.system.class.loader=net.sf.taverna.raven.prelauncher.BootstrapClassLoader
-Dapple.laf.useScreenMenuBar=true -Dapple.awt.graphics.UseQuartz=false
-Dsun.swing.enableImprovedDragGesture
java_command:
/home/reinout/devel/taverna-workbench-2.2.0/lib/prelauncher-2.2.jar
Launcher Type: SUN_STANDARD
Environment Variables:
PATH=/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/reinout/bin
USERNAME=reinout
LD_LIBRARY_PATH=/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64/server:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/../lib/amd64
SHELL=/bin/bash
DISPLAY=:0
Signal Handlers:
SIGSEGV: [libjvm.so+0x785b60], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x785b60], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x64aaf0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: [libjvm.so+0x64aaf0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGXFSZ: [libjvm.so+0x64aaf0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x64aaf0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x64ac80], sa_mask[0]=0x00000000, sa_flags=0x10000004
SIGHUP: [libjvm.so+0x64d620], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGINT: [libjvm.so+0x64d620], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGTERM: [libjvm.so+0x64d620], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGQUIT: [libjvm.so+0x64d620], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
--------------- S Y S T E M ---------------
OS:Linux
uname:Linux 2.6.38.5-22.fc15.x86_64 #1 SMP Mon May 2 19:28:55 UTC 2011 x86_64
libc:glibc 2.13.90 NPTL 2.13.90
rlimit: STACK 8192k, CORE 0k, NPROC 1024, NOFILE 1024, AS infinity
load average:-nan 0.00 0.00
/proc/meminfo:
CPU:total 4 (2 cores per cpu, 2 threads per core) family 6 model 37 stepping 5,
cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, ht
Memory: 4k page, physical 3899968k(108248k free), swap 5996540k(5450560k free)
vm_info: OpenJDK 64-Bit Server VM (20.0-b11) for linux-amd64 JRE
(1.6.0_22-b22), built on Apr 19 2011 21:02:21 by "mockbuild" with gcc 4.6.0
20110413 (Red Hat 4.6.0-4)
time: Sun May 8 14:31:24 2011
elapsed time: 88 seconds
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