[Bug 1353] New: Using FastQC program this error appeared
bugzilla-daemon at icedtea.classpath.org
bugzilla-daemon at icedtea.classpath.org
Fri Mar 22 05:20:19 PDT 2013
http://icedtea.classpath.org/bugzilla/show_bug.cgi?id=1353
Bug ID: 1353
Summary: Using FastQC program this error appeared
Classification: Unclassified
Product: VisualVM Harness
Version: unspecified
Hardware: x86
OS: Windows
Status: NEW
Severity: normal
Priority: P3
Component: VisualVM
Assignee: unassigned at icedtea.classpath.org
Reporter: mokita_braga at hotmail.com
line:
$ fastqc -t 500 sequence.fastq
Started analysis of sequence.fastq
It started and went until 100%, but in the end while generating a zip file this
happened:
[thread 140382687459072 also had an error]
#
[thread 140382688511744 also had an error]
# A fatal error has been detected by the Java Runtime Environment:
#
# [thread 140382686406400 also had an error]
SIGSEGV (0xb) at pc=0x00007fcc14850fb2, pid=8459, tid=140382689564416
#
# JRE version: 6.0_24-b24
# Java VM: OpenJDK 64-Bit Server VM (20.0-b12 mixed mode linux-amd64 )
# Derivative: IcedTea6 1.11.5
# Distribution: CentOS release 6.3 (Final), package
rhel-1.50.1.11.5.el6_3-x86_64
# Problematic frame:
# V [libjvm.so+0x311fb2] ftell+0x311fb2
#
# An error report file with more information is saved as:
# /tmp/hs_err_pid8459.log
#
# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
# http://icedtea.classpath.org/bugzilla
#
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